There's a good chance you are running into a flow restriction with the stock exhaust/stock down pipe.. This is similar to having a plugged cat.. Back pressure starts to climb forcing manifold pressure up, but total air flow goes down... It would be interesting to see how things look with the stock MAF cal and stock MAF housing.. Possibly the stock MAP sensor as well to get a better base line...
I am on the stock MAP sensor and stock MAF housing size/stock Maf call.. I run 2.1 - 2.2 load and 34psi MAP reading.. You're running 5psi more then me, but 5 lbs/m lower mass airflow.. I am basically full bolt on, FMIC, custom 3" turbo back exhaust, stock turbo ect..
You're also getting quit a bit of knock which.. high back pressure will cause extra heat in the combustion chamber increasing knock..
Part of your logs..

- Massive knock.jpg (570.1 KiB) Viewed 1272 times
This is from my car for comparison..

- Adam no knock.jpg (549.29 KiB) Viewed 1272 times
A few other notes I saw.. Your load based fuel cut is close to what you are running, if you start driving into different area's you might hit this as your load and boost targets shift to account for different altitudes and ambient air temps.. I ran into this problem when I did a 13,000 km road trip from Vancouver BC to Florida..
I like to run my throttle based Boost limit 2 to 3 psi lower then my hard Boost cut limits.. You're running with a 1 psi difference..